Databases: Network Population Models








Coarse Dynamics for Coarse Modeling: an Example From Population Biology

Justin Bush, Konstantin Mischaikow

Networks have become a popular way to concisely represent complex nonlinear systems where the interactions and parameters are imprecisely known. One challenge is how to best describe the associated dynamics, which can exhibit complicated behavior sensitive to small changes in parameters. A recently developed computational approach that we refer to as a database for dynamics provides a robust and mathematically rigorous description of global dynamics over large ranges of parameter space. To demonstrate the potential of this approach we consider two classical age-structured population models that share the same network diagram and have a similar nonlinear overcompensatory term, but nevertheless yield different patterns of qualitative behavior as a function of parameters. Using a generalization of these models we relate the different structure of the dynamics that are observed in the context of biologically relevant questions such as stable oscillations in populations, bistability, and permanence.


All of the files on this page along with the Database Explorer software (Mac only) can be downloaded in a single zip file here. This contains both Morse database files (*.mdb) with no Conley index information, full Conley-Morse database files (*.cmdb) including all computed Conley index information. Version 1.0 of the Database Explorer will open the 2-d parameter space computations while version 2.0 is required for the 3-d computation. Each version is placed in the appropriate folder in the zip file. A guide for interpreting the output of the Database Explorer can be found on this page.

The following tables summarize the important information about each of the computations. Information about time is for a run on a cluster with 16 nodes, each sharing 128GB of memory among 32 processors.

The database software used to produce these files can be downloaded here.

Parameter
Space
Parameter
Space
Depth
Phase
Space
Phase
Space
Min
Depth
Phase
Space
Max
Depth
Phase
Space
Initial
Size
Limit
Morse
Process
Time (s)
Conley
Process
Time (s)
Data
7 24 32 1 10000 3789 1419 Intermediate-0.0
CMG and Conley Indices
7 24 32 1 10000 6778 3475 Intermediate-0.01
CMG and Conley Indices
7 24 32 1 10000 9728 3810 Intermediate-0.02
CMG and Conley Indices
7 24 32 1 10000 26310 3853 Intermediate-0.05
CMG and Conley Indices
7 24 32 1 10000 42974 5219 Intermediate-0.1
CMG and Conley Indices
7 24 32 1 10000 4920 Intermediate-1.0
CMG and Conley Indices


This table contains a database run on the full 3-d parameter space. The variable s has been transformed to s' = -log s in order to better show the changes in dynamics that occur for small values of s. Therefore the map represented here is



This computation was performed with version 2.0 of the database software.

Parameter
Space
Parameter
Space
Depth
Phase
Space
Phase
Space
Min
Depth
Phase
Space
Max
Depth
Phase
Space
Initial
Size
Limit
Morse
Process
Time (s)
Conley
Process
Time (s)
Data
θ12: 5
s': 6
24 32 1 10000 Intermediate-3d
CMG and Conley indices